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Useful Tools


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Python Packages


vaex is the recomended tool for working with large dataframes. It can also be used for basic data visualization and generating parquet files.


FTP Files by Proxy

Hardware inside the server room at UCR (e.g. lab VMs) can't access ftp servers because the firewall is stateless. As a result, we have to use a proxy that can be found here.

Syncing Files

aria2c can be used to sync a massive number of files (pun intended).

Useful Resources for Parsing Files

  • This page contains the complete specification for mzML files.

Mass Spectrometry Visualization

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Last update: April 18, 2023 19:13:00