The following are the lecture notes, a subset of which will be used in class:
Main slides from the textbook by Jones and Pevzner.
Material from my old slides will be added from time to time to provide coverage on more sophisticated algorithms in computational biology.
The shortened introductory lecture
Sequence alignment and dynamic programming - a succinct treatment
Approximation of shortest common superstrings
You should check the Topics of Presentation and let me know your preferences (topics and presentation dates) as early as possible.