Constructed cowpea pan-genome from de novo assemblies of seven cowpea accession.
Fig: Interative whole genome comparison for chromosome 1 in cowpea pan-genome
PGV: a Reference-agnostic Representation of Pan-genomes.
PGV is a novel representation method based on the notion of consensus ordering that enables an intuitive, effective and interactive visualization of a pan-genome. Designed pipeline of building consensus ordering to represent pan-genome structure. Built web visualization tool to visualize each assembly in pan-genome comparing to consensus ordering.
Fig: PGV pipeline
Genome Annotations and Comparative Genomics Analysis.
Performed genome annotations for multiple species including cowpea, phytophthora and babesia.
Fig: Synteny view of genome comparison between cowpea and three other legumes