DeepPASTA: Deep neural network based polyadenylation site analysis
Trained parameters of the polyA site prediction model:
DeepPASTA_polyA_site_learned.hdf5
Trained parameters of the tissue-specific polyA site prediction model:
DeepPASTA_tissue_specific_polyA_learned.hdf5
Trained parameters of the tissue-specific relatively dominant polyA site prediction model (tissue set one):
Brain:
DeepPASTA_relatively_brain_learned.hdf5
Kidney:
DeepPASTA_relatively_kidney_learned.hdf5
Liver:
DeepPASTA_relatively_liver_learned.hdf5
MAQC_Brain1:
DeepPASTA_relatively_maqc_brain1_learned.hdf5
MAQC_Brain2:
DeepPASTA_relatively_maqc_brain2_learned.hdf5
MAQC_UHR1:
DeepPASTA_relatively_maqc_UHR1_learned.hdf5
MAQC_UHR2:
DeepPASTA_relatively_maqc_UHR2_learned.hdf5
Muscle:
DeepPASTA_relatively_muscle_learned.hdf5
Testis:
DeepPASTA_relatively_testis_learned.hdf5
Trained parameters of the tissue-specific relatively dominant polyA site prediction model (tissue set two):
BCell1:
DeepPASTA_relatively_BCell1_learned.hdf5
BCell2:
DeepPASTA_relatively_BCell2_learned.hdf5
Brain:
DeepPASTA_relatively_brain_learned.hdf5
Breast:
DeepPASTA_relatively_breast_learned.hdf5
HES:
DeepPASTA_relatively_HES_learned.hdf5
Ovary:
DeepPASTA_relatively_ovary_learned.hdf5
SK_muscle:
DeepPASTA_relatively_sk_muscle_learned.hdf5
Testis:
DeepPASTA_relatively_testis_learned.hdf5
Trained parameters of the tissue-specific absolutely dominant polyA site prediction model:
Brain:
DeepPASTA_absolutely_brain_learned.hdf5
Kidney:
DeepPASTA_absolutely_kidney_learned.hdf5
Liver:
DeepPASTA_absolutely_liver_learned.hdf5
MAQC_Brain1:
DeepPASTA_absolutely_maqc_brain1_learned.hdf5
MAQC_Brain2:
DeepPASTA_absolutely_maqc_brain2_learned.hdf5
MAQC_UHR1:
DeepPASTA_absolutely_maqc_UHR1_learned.hdf5
MAQC_UHR2:
DeepPASTA_absolutely_maqc_UHR2_learned.hdf5
Muscle:
DeepPASTA_absolutely_muscle_learned.hdf5
Testis:
DeepPASTA_absolutely_testis_learned.hdf5