Publications

1. S. Bozdag, T. J. Close, S. Lonardi, "Computing the minimal tiling path from a physical map by integer linear programming", Proceedings of Workshop on Algorithms in Bioinformatics (WABI’08), pp. 148-161, Universitat Karlsruhe, Germany, 2008.

Journal version: in preparation

2. S. Bozdag, T.J. Close and S. Lonardi, "A Compartmentalized Approach to the Assembly of Physical Maps", Proceedings of IEEE International Symposium on Bioinformatics & Bioengineering (BIBE'07), pp. 218-225, Boston, MA, 2007. (Acceptance rate: 13%).

Journal version: BMC Bioinformatics 2009, 10:217

3. S. Bozdag, T. J. Close, S. Lonardi, "The distribution of genes and its correlation to GC content in the genomes of Oryza sativa and Arabidopsis thaliana", in preparation.

4. K. Madishetty, P. Condamine, S. Bozdag, M. Moscou, J. Svensson, J. Zheng, S. Wanamaker, P. Bhat, E. Rodriguez, H. Walia, J. Reznik, H. Le, M. C. Luo, T. Jiang, S. Lonardi, H. Witt, F. You, A. Kleinhofs, N. Stein, L. Cooper, K. Gill, G. Muehlbauer, R. Wise, T. J. Close, "Towards a physical map of the barley gene space", in preparation.

Abstracts & Posters

1. T. J. Close, S. Lonardi, M.C. Luo, J. Dolezel, P. Bhat, K. Madishetty, J. T. Svensson, J. Zheng, Y. Wu, S. Bozdag, J. Resnik, S. Wanamaker, R.D. Fenton, M. Moscou, P. Condamine, E. L Rodriguez, M. L Roose, Y. Ma, F. You, J. Bartos, H. Simkova, N. Rostoks, L. Ramsay, D.F. Marshall, R. Waugh, N. Stein, A. Graner, R. Varshney, K. Sato, R. Wing, A. Schulman, É, B. Steffenson, “Coupling ESTs, SNPs, BACs, Mapping Populations, Flow-Sorting And Synteny To Access The Barley Genome”, Poster in Plant and Animal Genomes XVII Conference, 2009.

2. S. Bozdag, T. J. Close, S. Lonardi, “A Compartmentalized Approach to the Assembly of the Physical Maps”, Poster in Plant and Animal Genomes XVI Conference, 2008.

3. Y. Ma, H. Witt, R. Naderi, F. M. You, C. X. Wang, K. Madishetty, J. T. Svensson, J. Zheng, P. Condamine, R. Ashgar, S. Wanamaker, P. Bhat, M. Moscou, E. Rodriguez, H. Walia, J. Resnik, S. Bozdag, G. J. Muehlbauer, S. Lonardi, T. J. Close, M.C. Luo, “Updates on Contig Assembly with Gene-Containing BACs of Barley”, Poster in Plant and Animal Genomes XVI Conference, 2008.

4. K. Madishetty, P. Condamine, M. Moscou, J. T. Svensson, J. Zheng, S. Wanamaker, P. Bhat, E. Rodriguez, H. Walia, S. Bozdag, J. Resnik, H. Le, S. Heinen, G. H. Muehlbauer, M.C. Luo, T. Jiang, S. Lonardi, H. Witt, F. You, T. J. Close, “Progress on physical mapping of the gene-space of barley”, Abstract in Plant and Animal Genomes XV Conference, 2007.

5. Y. Ma, H. Witt, R. Naderi, F. M. You, C. X. Wang, K. Madishetty, J. T. Svensson, J. Zheng, P. Condamine, R. Ashgar, S. Wanamaker, P. Bhat, M. Moscou, E. Rodriguez, H. Walia, J. Resnik, S. Bozdag, G. J. Muehlbauer, S. Lonardi, T. J. Close, M.C. Luo, “Contig assembly of gene-containing BACs of barley”, Poster in Plant and Animal Genomes XV Conference, 2007.

6. J. T. Svensson, K. Madishetty, J. Zheng, Jin Xu, P. Condamine, R. Ashgar, S. Wanamaker, P. Bhat, M. Moscou, E. Rodriguez, H. Walia, J. Resnik, H. Le, S. Bozdag, H. Witt, F. You, N. Rostoks, R. Waugh, N. Stein, R. Varshney, A. Graner, M.C. Luo, X. Cui, T. Jiang, S. Lonardi, T. J. Close, “Connecting the barley genetic and physical maps for 1000 abiotic stress genes”, Abstract in Plant and Animal Genomes XIV Conference, 2006.