Algorithms and Computational Biology Lab
   


- Talks: 2002-2003 -

Talks are generally held on Thursdays, from 2:10-3:30pm, in the Colloquium room (Surge 284).

Date Speaker Topic
Oct 17 Wojciech Jawor E.Lawler, "Knapsack-like scheduling problems..."
Oct 24 Jing Li Title: "Haplotyping as Perfect Phylogeny: Conceptual Framework and Efficient Solutions" by Dan Gusfield
Ref: RECOMB'02 166-175
Oct 31 No Meeting Happy Halloween
Nov 7 Jiri Sgall Cake-cutting algorithms
Nov 14 Andres Figeuroa Statistical methods for assesing confidence in phylogenies with binary fingerprint vectors.
Nov 21 Glenn Tesler Genome Rearrangements in Mammalian Evolution: Lessons from Human and Mouse Genomes

Abstract:
Although analysis of genome rearrangements was pioneered by Dobzhansky and Sturtevant 65 years ago, we still know very little about the rearrangement events that produced the existing varieties of genomic architectures. The genomic sequences of human and mouse provide evidence for a larger number of rearrangements than previously thought. We describe a new algorithm for constructing synteny blocks, study arrangements of synteny blocks in human and mouse, derive a most parsimonious human-mouse rearrangement scenario, and provide evidence that intrachromosomal rearrangements are more frequent than interchromosomal. Our analysis is based on the human-mouse breakpoint graph, which reveals related breakpoints and allows one to find a most parsimonious scenario.

Nov 28 Thankgiving
Dec 5 Keith Humphreys Title: Primes in P,   The AKS Algorithm

Given n > 2, we would like determine if n is prime or composite in deterministic polynomial time. This talk covers the recient algorithm by Agrawal, Kayal, and Saxena, using subsequent insights by Daniel Bernstein.

Dec 12 No Meeting
Date Speaker Topic
Next quarter Swastik Kopparty For the seminar, I will talk about algorithmic problems in coding theory, based mostly on the paper "Algorithmic Complexity in Coding Theory and the Minimum Distance Problem" by Alexander Vardy and some parts from "Algorithmic Introduction to Coding Theory" course notes by Madhu Sudan.