| Date |
Speaker |
Topic |
| Oct 17 |
Wojciech Jawor |
E.Lawler, "Knapsack-like scheduling problems..."
|
| Oct 24 |
Jing Li |
Title: "Haplotyping as Perfect Phylogeny: Conceptual Framework and
Efficient Solutions" by Dan Gusfield
Ref: RECOMB'02 166-175
|
| Oct 31 |
No Meeting |
Happy Halloween |
| Nov 7 |
Jiri Sgall |
Cake-cutting algorithms
|
| Nov 14 |
Andres Figeuroa |
Statistical methods for assesing confidence in phylogenies with binary fingerprint vectors.
|
| Nov 21 |
Glenn Tesler |
Genome Rearrangements in Mammalian Evolution:
Lessons from Human and Mouse Genomes
Abstract:
Although analysis of genome rearrangements was pioneered by Dobzhansky
and Sturtevant 65 years ago, we still know very little about the
rearrangement events that produced the existing varieties of genomic
architectures. The genomic sequences of human and mouse provide
evidence for a larger number of rearrangements than previously
thought. We describe a new algorithm for constructing synteny blocks,
study arrangements of synteny blocks in human and mouse, derive a most
parsimonious human-mouse rearrangement scenario, and provide evidence
that intrachromosomal rearrangements are more frequent than
interchromosomal. Our analysis is based on the human-mouse breakpoint
graph, which reveals related breakpoints and allows one to find a most
parsimonious scenario.
|
| Nov 28 |
Thankgiving |
|
| Dec 5 |
Keith Humphreys |
Title:
Primes in P, The AKS Algorithm
Given n > 2, we would like determine if n is prime or composite in
deterministic polynomial time.
This talk covers the recient algorithm by
Agrawal, Kayal, and Saxena, using subsequent insights by Daniel Bernstein.
|
| Dec 12 |
No Meeting |
|
| Date |
Speaker |
Topic |
| Next quarter |
Swastik Kopparty |
For the seminar, I will talk about algorithmic problems in coding theory,
based mostly on the paper "Algorithmic Complexity in Coding Theory and
the Minimum Distance Problem" by Alexander Vardy and some parts from
"Algorithmic Introduction to Coding Theory" course notes by Madhu Sudan.
|