CS 260 (Seminar in Bioinformatics) Homepage


The following is the tentative schedule of student presentations:

Jan. 12. Wei Li: RNA-seq based transcriptome assembly: sparsity, bias correction and multiple sample comparison

Jan. 19. Olga Tanaseichuk: Separating metagenomic data into genomes via clustering

Jan. 26. Ergude Bao: SEED: Efficient clustering of next generation sequences

Feb. 2. Elena Strzheletska: A new computational approach for finding drug side effects

Feb. 9. Ei-Wen Yang: Differential expression analysis at gene and isoform levels

Feb. 16. Tu Wang: Correcting errors in NGS reads

Feb. 21. Anton Polishko: Computational methods for nucleosome positioning

Feb. 23. Wei Li: Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

Mar. 1. Olga Tanaseichuk: Metagenome assemblers

Mar. 8. Ergude Bao: A survey of NGS genome assembly methods

Mar. 15. Elena Strzheletska: Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS